Genotype and Allele Frequency of a 32-Base Pair Deletion Mutation in the CCR5
Gene in Various Ethnic Groups: Absence of Mutation among Asians and Pacific
Islanders
Yuanan Lu, PhD; Vivek R. Nerurkar, PhD; Wan-Mohaiza Dashwood, BS; Cora L.
Woodward, BS; Sherimay Ablan, BA; Cecilia M. Shikuma, MD; Andrew
Grandinetti, PhD; Healani Chang, MPH; Hien Tran Nguyen, MD; Zunyou Wu,
MD; Yasuhiro Yamamura, PhD; William O. Boto, PhD; Andrew Merriwether, PhD;
Takeshi Kurata, MD, PhD; Roger Detels, MD; and Richard Yanagihara, MD
Int J Infect Dis 1999; 3:186-191.
Background: A 32-base pair (bp) deletion mutation in the beta-chemokine receptor
CCR5 gene has been associated with resistance against human immunodeficiency
virus type 1 (HIV-1) infection and disease. Large-scale studies conducted among
Caucasians indicate that individuals who are homozygous for this deletion mutation
(D32/D32) are protected against HIV-1 infection despite multiple high-risk
exposures, whereas CCR5/ D32 heterozygotes have a slower progression to
acquired immunodeficiency syndrome (AIDS). Objective: To determine the
genotype and allele frequencies of the CCR5 gene 32-bp deletion mutation among
ethnically diverse non-Caucasian populations. Methods: DNA, extracted from blood
collected between 1980 and 1997 from 1912 individuals belonging to various ethnic
groups, including 363 Caucasians, 303 Puerto Rican Hispanics, 150 Africans, 606
Asians, and 490 Pacific Islanders, were analyzed for the CCR5 gene 32-bp deletion
mutation by a polymerase chain reaction (PCR)-based assay, using an
oligonucleotide primer pair designed to discriminate CCR5 alleles without
restriction endonuclease analysis. Results: The comparative frequency of
CCR5/D32 heterozygosity was 61 of 363 (16.8%) in Caucasians, 17 of 303 (5.6%)
in Puerto Rican Hispanics, 9 of 490 (1.8%) in Pacific Islanders, 0 of 606 (0%) in
Asians, and 0 of 150 (0%) in Africans. Conclusions: The data confirm the high
frequency of CCR5/D32 heterozygosity among Caucasians. Intermediate and
low-level D32 allele frequencies among Puerto Rican Hispanics and Hawaiians
could be attributed to recent European Caucasian gene flow. By contrast, the
inability to detect the D32 allele among Asians and other Pacific Islander groups
suggests that other mechanisms are responsible for resistance to HIV-1 infection in
these populations.
KEYWORDS: chemokine receptor, human immunodeficiency virus, Melanesia, Micronesia,
polymerase chain reaction, Polynesia, population genetics
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